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A few Linux commands

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Copy lines containing ' 0' (four blank spaces followed by a zero)  $awk /'^ 0'/'{print $0}' file1.txt > file2.txt 
Disk space usage $df -h 
Copy lines from 1001 to the rest of the file to another file $tail --lines=+1001 file1.txt > file2.txt 
Appending contents into another file :w>>filename.txt 
Copy all the lines containing the pattern NNN from fil1.txt and paste them into file2.txt $awk /^NNN/'{print $0}' file1.txt > file2.txt 
Copy first 1000 lines to another file  $head -1000 file1.txt > file2.txt 
PDOS $~/bin/pdosxml C.PDOS > C.DOS_xml 
Listing properties of files with respect to time accessed $ls -t -als  
Replacing XYZ with ABC in file *.* $sed -i s/'XYZ'/'ABC'/g *.* 
IP address  $ifconfig 
Finding a folder named xyz $find directorypath2besearched -name xyz 
Chaning ownership of a folder foldername $chown -R foldername ownername 
Size of folder XYZ $du -s XYZ 
Copy last 1000 lines to another file  $tail -1000 file1.txt > file2.txt 
for bash $source ~/.bashrc 
for csh or tcsh $source ~/.cshrc 
To check all the available PATHs  $echo $PATH 
To check which libraries are loaded by an executable $ldd NameOfExe 
To see a list of the environment variables that are already set on your machine $env 
To see the appearances of the name Einstein in an opened document (appearances are highlighted) /Einstein 
Check the full path of the environment variable PETSC_DIR $echo $PETSC_DIR 
Which shell echo $SHELL 
Quota on teragrid quota -v 
ifort version ifort --version 
Link lapack (TACC) -Wl,-rpath,${TACC_MKL_LIB} -L ${TACC_MKL_LIB} -lmkl_lapack 
Link Scalapack (TACC) -Wl,rpath,${TACC_MKL_LIB} -L ${TACC_MKL_LIB} -lmkl_scalapack_lp64 -lmkl_blacs_intelmpi_lp64 -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -lpthread 
Details of a module module show mkl/12.1 
To find default versions look for asterisk (LLNL) at the command prompt dpkg-defaults 
to find default compilers in use in your shell (LLNL) use -l compilers  
Check the version of a compiler mpif90 -V 
Architecture uname -a 
Math in bash script sed -i s/'Z1'/$((100*Z-99))/g rand_num.txt 
change sed -i s/'p50_1'/'fynman_'$Z/g dft.qsub 
Starting interactive mode qsub -I 
Loading a modeul module load openmpi/gnu (check first with module avail)) 
Delete line containting a matching text 'hello' sed -i '/\<keyword\>/d' *.txt 
To use sed in iMac sed -i '' s/'nan'/'0'/g vfield_*.txt 
Removing a line containing, say, '#t=5' in a file named filename.txt using VIM command  $sed -i /'#t =5'/d filename.txt 
To check underlying compilers of an executable, e.g. mpiifort $mpiifort -show 
Currently Loaded Modulefiles $module list 
Deleting the first line from a text file sed -i '1d' filename 
go to start/end of a command line (Mac) ctrl+a/ctrl+e  
To delete all lines containing the word 'nothing' $sed -i '/nothing/d' filename, $sed '/nothing/d' input.txt > out.out  
Changing permission to all files in a folder  $chmod -R 755 {DIR} 
Delete 2nd to 4th line in a file C.XV $sed -i '2,+2d' C.XV 
Delete everything but 2nd to 4th line in a file C.XV $sed -i '2,4!d' C.XV 
FARBER: checking group statistics $qstatgrp 
iMAC: Search a text "Good" in files at the current location $mdfind "Good" -onlyin . 
LINUX: search a text 'pattern' $grep -rnw '/path/to/somewhere/' -e "pattern" 
replace folder path using sed $sed -i s/'\/home\/1621\/softwares\/espresso-5.2.0\/pseudo\/upf_files\/'/'test'/g input.txt 
Creating bash file (if not there already) $touch ~/.bash_profile 
shortcut to connecting a remote host $alias shortname='ssh username@hostname' 
Showing 52 items